Alkan C, Eichler EE, Bailey JA, Sahinalp SC, Tüzün E. (2004). The role of unequal crossover in alpha-satellite DNA evolution: A computational analysis. J Comput Biol
11(5):933-944.
Blog Archives
Identifying uniformly mutated segments within repeats
Sahinalp SC, Eichler EE, Goldberg P, Berenbrink P, Friedetzky T, Ergun F. (2004). Identifying uniformly mutated segments within repeats. J Bioinform Comput Biol Dec;2(4):657-668.
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium. (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature Dec;432(7018):695-716. *Contributors Tüzün E, Eichler EE to segmental duplication section of the manuscript, pages 708-709.
The sequence and analysis of duplication-rich human chromosome 16
Martin J, Han C, Gordon LA, Terry A, Prabhakar S, She X, (109 authors), Rokhsar DS, Eichler EE, Gilna P, Lucas SM, Myers RM, Rubin EM, Pennacchio LA. (2004). The sequence and analysis of duplication-rich human chromosome 16. Nature Dec;432(7020):988-994.
Finishing the euchromatic sequence of the human genome
International Human Genome Sequencing Consortium. (2004). Finishing the euchromatic sequence of the human genome. Nature Oct;431(7011):931-45. *Contributors Tüzün E, Eichler EE to segmental duplication, heterochromatin and gap analyses sections of the manuscript, pages 938-941.
Shotgun sequence assembly and recent segmental duplications within the human genome
She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tüzün E, Church DM, Sutton G, Halpern AL, Eichler EE. (2004). Shotgun sequence assembly and recent segmental duplications within the human genome. Nature Oct;431(7011):927-930.
The DNA sequence and comparative analysis of human chromosome 5
Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, (60 authors), Cheng JF, Eichler EE, Olsen A, Pennacchio LA, Rokhsar DS, Richardson P, Lucas SM, Myers RM, Rubin EM. (2004). The DNA sequence and comparative analysis of human chromosome 5. Nature Sep;431(7006):268-274.
Recurrent sites for new centromere seeding
Ventura M, Weigl S, Carbone L, Cardone MF, Misceo D, Teti M, D.adabbo P, Wandall A, Bjoerck E, de Jong P, She X, Eichler EE, Archidiacono N, Rocchi M. (2004). Recurrent sites for new centromere seeding. Genome Res Sep;14(9):1696-1703.
The structure and evolution of centromeric transition regions within the human genome
She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, Miller W, Schwartz S, Eichler EE. (2004). The structure and evolution of centromeric transition regions within the human genome. Nature Aug;430(7002):857-864.
Regional patterns of gene expression in human and chimpanzee brains
Khaitovich P, Muetzel B, She X, Lachmann M, Hellmann I, Dietzsch J, Steigele S, Do HH, Weiss G, Enard W, Heissig F, Arendt T, Nieselt-Struwe K, Eichler EE, Pääbo S. (2004).
Regional patterns of gene expression in human and chimpanzee brains. Genome Res Aug;14(8):1462-1473.
Complex SNP-related sequence variation in segmental genome duplications
Fredman D, White SJ, Potter S, Eichler EE, Den Dunnen JT, Brookes AJ. (2004). Complex SNP-related sequence variation in segmental genome duplications. Nat Genet Aug;36(8):861-866.
Segmental duplications flank the multiple sclerosis locus on chromosome 17q
Chen DC, Saarela J, Clark RA, Miettinen T, Chi A, Eichler EE, Peltonen L, Palotie A. (2004). Segmental duplications flank the multiple sclerosis locus on chromosome 17q. Genome Res Aug;14(8):1483-1492.
