Eichler EE, Clark RA, She X. (2004). An assessment of the sequence gaps: Unfinished business in a finished human genome. Nat Rev Genet May;5(5):345-354.

Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE. (2004). Analysis of segmental duplications and genome assembly in the mouse. Genome Res May;14(5):789-801.

Tüzün E, Bailey JA, Eichler EE. (2004). Recent segmental duplications in the working draft assembly of the Brown Norway Rat. Genome Res Apr;14(4):493-506.

Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, (94 authors), Eichler EE, (130 authors), Rat Genome Sequencing Project Consortium. (2004). Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature Apr;428(6982):493-521.

Grimwood J, Gordon LA, Olsen A, (87 authors), Eichler EE, Pennacchio LA, Richardson P, Stubbs L, Rokhsar DS, Myers RM, Rubin EM, Lucas SM. (2004). The DNA sequence and biology of human chromosome 19. Nature Apr;428(6982):529-535.

Astbury C, Christ LA, Aughton DJ, Cassidy SB, Kumar A, Eichler EE, Schwartz S. (2004). Detection of deletions in de novo “balanced” chromosome rearrangements: Further evidence for their role in phenotypic abnormalities. Genet Med Mar-Apr;6(2):81-89.

Bailey JA, Baertsch R, Kent WJ, Haussler D, Eichler EE. (2004). Hotspots of mammalian chromosomal evolution. Genome Biol Mar;5(4):R23.

Locke DP, Segraves R, Nicholls RD, Schwartz S, Pinkel D, Albertson DG, Eichler EE. (2004). BAC microarray analysis of 15q11-q13 rearrangements and the impact of segmental duplications. J Med Genet Mar;41(3):175-182.

Istrail S, Sutton GG, Florea L, Halpern AL, Mobarry CM, Lippert R, (23 authors), Clark AG, Waterman MS, Eichler EE, Adams MD, Hunkapiller MW, Myers EW, Venter JC. (2004). Whole-genome shotgun assembly and comparison of human genome assemblies. Proc Natl Acad Sci U S A Feb;101(7):1916-1921.

Eichler EE, Frazer, KA. (2004). The nature, pattern and function of human sequence variation. Genome Biol 5(4):318.