O’Roak BJ, Vives L, Fu W, Egertson JD, Stanaway IB, Phelps IG, Carvill G, Kumar A, Lee C, Ankenman K, Munson J, Hiatt JB, Turner EH, Levy R, O’Day DR, Krumm N, Coe BP, Martin BK, Borenstein E, Nickerson DA, Mefford HC, Doherty D, Akey JM, Bernier R, Eichler EE, Shendure J. (2012). Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders. Science Dec 21;338(6114):1619-22.
Blog Archives
Estimating the human mutation rate using autozygosity in a founder population
Campbell CD, Chong JX, Malig M, Ko A, Dumont BL, Han L, Vives L, O’Roak BJ, Sudmant PH, Shendure J, Abney M, Ober C, Eichler EE. (2012). Estimating the human mutation rate using autozygosity in a founder population. Nat Genet Nov;44(11):1277-81.
Phenotypic heterogeneity of genomic disorders and rare copy-number variants
Girirajan S, Rosenfeld JA, Coe BP, Parikh S, Friedman N, Goldstein A, Filipink RA, McConnell JS, Angle B, Meschino WS, Nezarati MM, Asamoah A, Jackson KE, Gowans GC, Martin JA, Carmany EP, Stockton DW, Schnur RE, Penney LS, Martin DM, Raskin S, Leppig K, Thiese H, Smith R, Aberg E, Niyazov DM, Escobar LF, El-Khechen D, Johnson KD, Lebel RR, Siefkas K, Ball S, Shur N, McGuire M, Brasington CK, Spence JE, Martin LS, Clericuzio C, Ballif BC, Shaffer LG, Eichler EE. (2012). Phenotypic heterogeneity of genomic disorders and rare copy-number variants. N Engl J Med Oct 4;367(14):1321-31.
A high-coverage genome sequence from an archaic denisovan individual
Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prufer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andres AM, Eichler EE, Slatkin M, Reich D, Kelso J, Paabo S. (2012). A high-coverage genome sequence from an archaic denisovan individual. Science Oct 12;338(6104):222-6.
Non-invasive fetal genome sequencing: Opportunities and challenges
Tabor HK, Murray JC, Gammill HS, Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE, Rubens CE, Santillan MK, Eichler EE, Cheng EY, Bamshad MJ, Shendure J. (2012). Non-invasive fetal genome sequencing: Opportunities and challenges. Am J Med Genet A Oct;158A(10):2382-4.
Genetic consequences of programmed genome rearrangement
Smith JJ, Baker C, Eichler EE, Amemiya CT. (2012). Genetic consequences of programmed genome rearrangement. Curr Biol Aug 21;22(16):1524-9.
Autosomal dominant familial dyskinesia and facial myokymia: single exome sequencing identifies a mutation in adenylyl cyclase 5
Chen YZ, Matsushita MM, Robertson P, Rieder M, Girirajan S, Antonacci F, Lipe H, Eichler EE, Nickerson DA, Bird TD, Raskind WH. (2012). Autosomal dominant familial dyskinesia and facial myokymia: single exome sequencing identifies a mutation in adenylyl cyclase 5. Arch Neurol May 1;69(5):630-5.
Structural diversity and African origin of the 17q21
Steinberg KM, Antonacci F, Sudmant PH, Kidd JM, Campbell CD, Vives L, Malig M, Scheinfeldt L, Beggs W, Ibrahim M, Lema G, Nyambo TB, Omar SA, Bodo JM, Froment A, Donnelly MP, Kidd KK, Tishkoff SA, Eichler EE. (2012). Structural diversity and African origin of the 17q21.31 inversion polymorphism. Nat Genet Jul 1;44(8):872-80.
The bonobo genome compared with the chimpanzee and human genomes
Prufer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoc E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, Andre C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andres AM, Kelso J, Paabo S. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature Jun 28;486(7404):527-31.
Noninvasive whole-genome sequencing of a human fetus
Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE, Gammill HS, Rubens CE, Santillan DA, Murray JC, Tabor HK, Bamshad MJ, Eichler EE, Shendure J. (2012). Noninvasive whole-genome sequencing of a human fetus. Sci Transl Med Jun 6;4(137):137ra76.
Copy number variation detection and genotyping from exome sequence data
Krumm N, Sudmant PH, Ko A, O’Roak BJ, Malig M, Coe BP, Nhlbi Exome Sequencing Project N, Quinlan AR, Nickerson DA, Eichler EE. (2012). Copy number variation detection and genotyping from exome sequence data. Genome Res Aug;22(8):1525-32.
A genetic model for neurodevelopmental disease
Coe BP, Girirajan S, Eichler EE. (2012). A genetic model for neurodevelopmental disease. Curr Opin Neurobiol Oct;22(5):829-6.